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Novels
- Deserted Cities of the Heart (1988)
- Frontera (1984)
- Glimpses (1993)
- Jokers Wild (1987) with Edward Bryant and Leanne C. Harper and George R. R. Martin and John J. Miller and Walton Simons and Melinda M. Snodgrass
- Collected Stories (2009)
- Heroes and Villains (2017)
- Love in Vain (2001)
- Nine Hard Questions About the Nature of the Universe (1990)
- The Edges of Things (1991)
- Widows & Orphans: Leftovers by Lewis Shiner (2009)
- Modern Stories (1983)
- When the Music's Over (1991)
- Friedrich the Snow Man (2013)
- Gold (2013)
- Twilight Time (1991)
- A Box of Thunder (2011)
- Application (2012)
- Blood Relations (1981)
- Brujo (1982)
- Cabracan (1986)
- Canto MCML (2012)
- Ceremony (2008)
- Dancers (1987)
- Deserted Cities of the Heart (1984)
- Doglandia (2017)
- Epilogue: Third Generation (1987)
- Fractal Geometry (1991)
- Friedrich the Snow Man (2013)
- His Girlfriend's Dog (1989)
- Horses (1991)
- How I Won the War on Drugs (1990)
- Jeff Beck (1986)
- Kings of the Afternoon (1980)
- Like the Gentle Rain (1997)
- Lizard Men of Los Angeles (1999)
- Love in Vain (1988)
- Mozart in Mirrorshades (1985) with Bruce Sterling
- Mystery Train (1983)
- Nine Hard Questions about the Nature of the Universe (1983)
- Odd Man Out (1988)
- Omphalos (1990)
- Oz (1988)
- Pennies from Hell (1987)
- Perfidia (2004)
- Plague (1983)
- Primes (2000)
- Promises (1982)
- Rebels (1987)
- Relay (1991)
- Riders (1991)
- Scales (1990)
- Secrets (1993)
- Sitcom (1995)
- Six Flags over Jesus (1987) with Edith Shiner
- Snowbirds (1982)
- Soldier, Sailor (1990)
- Steam Engine Time (1989)
- Stompin' at the Savoy (1985)
- Straws (2007)
- Stuff of Dreams (1981)
- The Apparition (1991)
- The Best Part of Making Up (2001)
- The Black Sun (2014)
- The Circle (1982)
- The Death of Che Guevara (2009)
- The Gene Drain (1989)
- The Kiss (1991)
- The Long, Dark Night of Fortunato (1987)
- The Next (2017)
- The Shoemaker's Tale (1994)
- The Tale of Mark the Bunny (1999)
- The War at Home (1985)
- Things That Go Quack in the Night (1983) with Edith Shiner
- Till Human Voices Wake Us (1984)
- Tinker's Damn (1977)
- Tommy and the Talking Dog (1982)
- Twilight Time (1984)
- Voodoo Child (1993)
- White City (1990)
- Wild for You (1990)
- You Never Know (1999)
- Zero Hour (1988)
- "Can You Run with It?" (1998)
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あなたもアメリカSFが書ける?Anata mo Amerika SF ga Kakeru[Japanese] (1988)
あなたもアメリカSFがかける - About the Nominees for the 1989 Nebula Awards (1989) with Neal Barrett, Jr. and Gregory Benford and Lois McMaster Bujold and Orson Scott Card and Bradley Denton and Thomas M. Disch and George Alec Effinger and William Gibson and Steven Gould and John Kessel and Jack McDevitt and Ian McDonald and Judith Moffett and James Morrow and Pat Murphy and Steven Popkes and Mike Resnick and Lucius Shepard and Norman Spinrad and George Turner and Howard Waldrop and Walter Jon Williams and Connie Willis and Jane Yolen
- Afterword (Glimpses) (2018)
- Afterword (Love in Vain) (2009)
- Afterword: Nonsense and Sensibility (The Shadow on the Doorstep) (2009)
- Author's Note (Outside the Gates of Eden) (2019)
- Author's Notes (Collected Stories) (2009)
- Author's Notes (Heroes and Villains) (2017)
- Author's Notes (Widows & Orphans: Leftovers by Lewis Shiner) (2009)
- De Gustibus: A Beginner's Guide to the Mainstream (1989)
- De Gustibus: A Beginner's Guide to the Mainstream (Part II) (1989)
- De Gustibus: A Beginner's Guide to the Mainstream (Part III) (1989)
- De Gustibus: A Beginner's Guide to the Mainstream (Part IV) (1990)
- Editorial (Modern Stories #1) (1983)
- Foreword: The Left-Handed Muse (1991)
- Forum: Dateline 1999 (1989) with Isaac Asimov and Gregory Benford and Ray Bradbury and David Brin and Edward Bryant and Pat Cadigan and Robin Cook and Dan Simmons and Joyce Thompson and Jack Williamson
- House of Cards (1987)
- Inside the Movement: Past, Present, and Future (1992)
- Introduction (By Bizarre Hands) (1989)
- Introduction (Heroes and Villains) (2017)
- Introduction (Nine Hard Questions About the Nature of the Universe) (1990)
- Introduction (The Shadow on the Doorstep) (1987)
- Introduction (When the Music's Over) (1991)
- James P. Blaylock (1988)
- Let's All Be There (1987)
- Letter (Science Fiction Eye #2) (1987)
- Letter (Science Fiction Eye #3) (1988)
- Letter to Short Form, September 1990 (1990)
- Postscript (The Magic Spectacles) (1991)
- Read This (NYRSF, February 1995) (1995)
- Read This (NYRSF, January 1994) (1994)
- Read This (NYRSF, September 1988) (1988)
- Response to "The New Generation Gap" (1989)
- SF and Teen Suicide: The Nebula Awards Minority Report (1988)
- SF Rocks! (1997)
- The Left-Handed Muse (1987)
- The Short Unhappy Career of Lew Shiner, Tough-Guy Writer (1998)
- The Turkey City Lexicon (1990)
- What Has Gone Before (1989)
- Black & White (2008)
- Collected Stories (2009)
- Dark Tangos (2011)
- Frontera (2011)
- Glimpses (2010) with Hunt Greene and Shaun Lombard and Bart Sadowski and Ian Scott
- Widows & Orphans: Leftovers by Lewis Shiner (2009)
- Frontera (map) (1984)
- Dream Science (1990) by Thomas Palmer
- Hardwired (1987) by Walter Jon Williams
- Vacuum Flowers (1987) by Michael Swanwick
- A Conversation with Howard Waldrop & Lewis Shiner (1989) with Howard Waldrop and Lewis Shiner (co-interviewer Howard Waldrop)
- Shine of the Times (1979) with Stephen King (co-interviewers Pat Cadigan and Arnie Fenner and Marty Ketchum)
- A Conversation with Howard Waldrop & Lewis Shiner (1989) by Lewis Shiner and Howard Waldrop (co-interviewed with Howard Waldrop)
- Giving the C-Word the Slip: Lewis Shiner Interview (1992) by Carla Sinclair
- Greg Bear and Lewis Shiner (1989) by Charles Stross (co-interviewed with Greg Bear)
- Lewis Shiner (2009) by Margaret Killjoy
- Lewis Shiner Interview (1992) by Tom Upshaw and Wendy Wheeler
- Lewis Shiner--Dark Tangos (2011) by Samuel Montgomery-Blinn
- Lewis Shiner: A Sterling Example (1988) by uncredited
Non-Genre Titles
Novels
- Black & White (2008)
- Dark Tangos (2011)
- Outside the Gates of Eden (2019)
- Say Goodbye: The Laurie Moss Story (1999)
- Slam (1990)
- Private Eye Action As You Like It (1998) with Joe R. Lansdale
- Black as the Night (1979) with Joe R. Lansdale
- Castles Made of Sand (1997)
- Deep Without Pity (1980)
- Dirty Work (1992)
- Doctor Helios (2013)
- Flagstaff (1998)
- Gold (1989)
- Golfing Vietnam (2007)
- Kidding Around (1990)
- Language (1990)
- Man Drowning (1983) with Joe R. Lansdale
- Match (1990)
- Prodigal Son (1998)
- Rake-Off (1980)
- Sticks (1992)
- The Killing Season (1998)
- The Long Ride Out (2007)