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Novels
- Freedom Beach (1985) with John Kessel
- Look Into the Sun (1989)
- Mother Go (2017)
- Planet of Whispers (1984)
- The Omega Egg (2007) with Tobias S. Buckell and Michael A. Burstein and Pat Cadigan and Bill Fawcett and David Gerrold and Brian Herbert and Kay Kenyon and Nancy Kress and Stephen Leigh and Jody Lynn Nye and Laura Resnick and Mike Resnick and Kristine Kathryn Rusch and Robert Sheckley and Dean Wesley Smith and Jane Yolen
- Wildlife (1994)
- Heroines (1990)
- Masters of Science Fiction: James Patrick Kelly (2016)
- Ninety Percent of Everything (2011) with John Kessel and Jonathan Lethem
- Strange But Not a Stranger (2002)
- The First Law of Thermodynamics Plus Someone Else's Problem Plus Who Owns Cyberpunk? and Much More (2021)
- The Promise of Space and Other Stories (2018)
- The Wreck of the Godspeed and Other Stories (2008)
- Think Like a Dinosaur and Other Stories (1997)
- Digital Rapture: The Singularity Anthology (2012) with John Kessel
- Feeling Very Strange: The Slipstream Anthology (2006) with John Kessel
- Kafkaesque: Stories Inspired by Franz Kafka (2011) with John Kessel
- Nebula Awards Showcase 2012 (2012) with John Kessel
- Rewired: The Post-Cyberpunk Anthology (2007) with John Kessel
- The Secret History of Science Fiction (2009) with John Kessel
- Bernardo's House (2004)
- Burn (2005)
- Crazy Me (2011)
- Dividere la trama [Italian] (2017)
- Gli uomini sono un problema [Italian] (2016)
- Grace's Family (2018)
- Il più bel Natale di sempre [Italian] (2018)
- Immersione profonda [Italian] (2015)
- King of the Dogs, Queen of the Cats (2020)
- La follia della Godspeed [Italian] (2017)
- La storia di Pollice [Italian] (2018)
- Men Are Trouble (2016)
- Monsters (2017)
- Nessunposto [Italian] (2017)
- Plus or Minus (unpublished)
- Solstice (2004)
- The Omega Egg (Part 11 of 17) (2006)
- Think Like a Dinosaur (unpublished)
- Writer's Workshops (1991)
-
10¹⁶ to 1?10 to the power 16 to 1(1999)
- A Small Skirmish in the Culture Wars (2007) with Mike Resnick
- And No Torment Shall Touch Them (2017)
- Bad Dogs Escape (2011)
- Barry Westphall Crashes the Singularity (2002)
- Bernardo's House (2003)
- Bierhorst, R. G., Seera, B. L., and Jannifer, R. P. "Proof of the Existence of God and an Afterlife." Journal of Experimental Psychology. Volume 95, Spring, 2007, Pages 32-36 (1998)
- Big Guy (1994)
- Breakaway, Backdown (1996)
- Burn (2005)
- Candy Art (2002)
- Chemistry (1993)
- Crazy Me (2011)
- Crow (1984)
- Daemon (1987)
- Dancing with the Chairs (1989)
- Dea Ex Machina (1975)
- Death Therapy (1978)
- Declaration (2012)
- Dividing the Sustain (2007)
- Don't Stop (2007)
- Donut Hole (2021)
- Faith (1989)
- Faithful Sister (2020)
- Feel the Zaz (2000)
- Flight of Fancy (1979)
- Freedom Beach (1984) with John Kessel
- Friend (1984) with John Kessel
- Fruitcake Theory (1998)
- Glass Cloud (1987)
- Going Deep (2009)
- Grace's Family (2018)
- Grandfather Christmas (1994) with Robert Frazier
- Grandma +5°C (2021)
- Happy Ending 2.0 (2011)
- Heroics (1987)
- Home Front (1988)
- Homo Neuter (1981)
- Hubris (2002)
- Identity Crisis (1981)
- In Memory of (1982)
- Itsy Bitsy Spider (1997)
- King of the Dogs, Queen of the Cats (2020)
- Last Contact (1981)
- Lovestory (1998)
- Luck (2002)
- Making Good Time (1997) with Pat Cadigan and Nancy Kress and Rachel Pollack
- Men Are Trouble (2004)
- Miss Nobody Never Was (2013)
- Monsters (1992)
- Mother (2003)
- Mr. Boy (1990)
- Ninety Percent of Everything (1999) with John Kessel and Jonathan Lethem
- Not to the Swift (1979)
- One Sister, Two Sisters, Three (2016)
- Oneness: A Triptych (2015)
- Painting the Air (2011)
- Plus or Minus (2010)
- Pogrom (1991)
- Proof of the Existence of God (2002)
- Rat (1986)
- Saint Theresa of the Aliens (1984)
- Selfless (2019)
- Serpent (2004)
- Shoppers (2008)
- Sing, Pilgrim! (2013)
- Solstice (1985)
- Someday (2014)
- Someone Else's Problem (2021)
- Soulcatcher (2013)
- Splash (2012) with Scott A. Cupp and Paul Di Filippo and Michael Kurland and Richard A. Lupoff and Michael Mallory and Don Webb
- Standing in Line with Mister Jimmy (1991)
- Still Time (1983)
- Surprise Party (2008)
- Suspicious (2011)
- The Best Christmas Ever (2004)
- The Biggest (2012)
- The Chimp of the Popes (2014)
- The Cruelest Month (1983)
- The Dark Side of Town (2004)
- The Edge of Nowhere (2005)
- The Empty World (1984)
- The F & SF Diet (1984)
- The Fear That Men Call Courage (1980)
- The First Law of Thermodynamics (1996)
- The Ice Is Singing (2003)
- The Last (1985)
- The Last Judgment (2012)
- The Leila Torn Show (2006)
- The Man I Love (2020)
- The Prisoner of Chillon (1986)
- The Promise of Space (2013)
- The Propagation of Light in a Vacuum (1990)
- The Pyramid of Amirah (2002)
- The Rose Witch (2014)
- The True History of the End of the World (1995) with John Kessel and Jonathan Lethem
- The Wreck of the Godspeed (2004)
- Think Like a Dinosaur (1995)
- Tourists (2011)
- Uncanny (2014)
- Undone (2001)
- Unique Visitors (2001)
- Why the Bridge Stopped Singing (1996)
- Your Boyfriend Experience (2020)
- Yukui! (2018)
- A Dragon's Yuletide Shopping List (1990) with Robert Frazier
- Afterlife (1989)
- All I Want for Christmas (2001) with Robert Frazier
- Christmas Father (1991) with Robert Frazier
- Christmas Morning, 2015 (1995)
- Eating the Mystery (1998) with Robert Frazier
- Frakenfood (1993)
- Lepidopteran (1988)
- Looking Glass (1992) with Robert Frazier
- Sea Change (1982)
- Spamology (2003)
- Spellbound (1990)
- The Physicist, Falling (1992)
- The Two Cultures (for John Swope) (1992)
- Turning into Animals (1989)
- 2010 Nebula Awards Weekend (2010)
- A Field Guide to the Editors (2013)
- Adventures in Podcasting (2006)
- Afraid of the Darknet (2005)
- Afterword (Strange But Not a Stranger) (2002)
- Alternativity (2008)
- An Afterword: Where Do We Come From? What Are We? Where Are We Going? (2018)
- An All Too Brief Introduction to Creative Commons (2010)
- And the Winner Is (2009)
- Another Word: Listen Up! (2017)
- Ask Me Anything (2017)
- Billions and Billions (2015)
- Blinded by Science (2022)
- Both Sides of the Desk (2013)
- Bots (2003)
- Brave New Worlds (2010)
- Breathing the Blogosphere (2005)
- Brief Encounters: The Magazine Review: Analog, December 1994 (1994)
- Brief Encounters: The Magazine Review: Asimov's Science Fiction, November 1994 (1994)
- Brief Encounters: The Magazine Review: Century, Number 1 (1995)
- Brief Encounters: The Magazine Review: Science Fiction Age, September 1994 (1994)
- Brief Encounters: The Magazine Review: The Magazine of Fantasy and Science Fiction, May 1994 (1994)
- Bring on the Digital Hugos! (2005)
- Burning Questions (2013)
- Celebrating 50 Years of Locus (2018)
- Comics (1999)
- Comments by the Nominees for the 1986 Nebula Awards (1987) with Isaac Asimov and Greg Bear and Gregory Benford and Pat Cadigan and Orson Scott Card and Suzy McKee Charnas and William Gibson and Leigh Kennedy and Judith Moffett and James Morrow and Kim Stanley Robinson and Lucius Shepard and Robert Silverberg and Nancy Springer and Howard Waldrop and F. Paul Wilson and Gene Wolfe and Roger Zelazny
- Cons (2002)
- Content (1999)
- Cosmologist, Space Traveler, Hero (2019)
- Cover Art (2003)
- Curation, Please! (2015)
- Cyberpunk (2001)
- Dancing with Nancy (1997)
- Deep Reading (2019)
- Digital Heroes (2021)
- Digital Rapture (2012) with John Kessel
- Discovering the Unique Voice of J3(P)K2+L (2011) with John Kessel and Jonathan Lethem
- Dismal (2021)
- Don't Read the Comments (2018)
- Dude, Where's My Hovercar? (2010)
- Ebooks (2001)
- eBooks Again? (2004)
- Encuentro Fractal '09 (2009) with John Kessel
- Encyclopedic! (2012)
- Experiment (1998)
- Expertise (2000)
- Exploring (2001)
- Face the Tweets (2010)
- Fantastic (2011)
- Fire the Canon! (2019)
- Frequent Filers (2003)
- FTL (2004)
- Full Moon (2019)
- Gallimaufry (2004)
- Gardner (2018)
- Gardner! (2019)
- Genre (2004)
- Get It? (2021)
- Good (and Bad) News from Outer Space (2014)
- Good Bots and Bad (2022)
- Hacking Cyberpunk (Introduction to Rewired: The Post-Cyberpunk Anthology) (2007) with John Kessel
- Happy Red Planet (2007)
- Harry and Dot (2017)
- Hear Now (2009)
- Heirs Apparent: Allen Steele (1990)
- Heirs Apparent: Kathe Koja (1990)
- Hold The Phones! (2017)
- Hugo (2002)
- In Which Your Editors Consider the Nebula Awards of Yesterday, Today, and Tomorrow (2012) with John Kessel
- In Your Ear (2006)
- Inbox (2000)
- Introduction (A Handful of Pearls & Other Stories) (2010)
- Introduction (Down in the Fog-Shrouded City) (2002)
- Introduction (Flavors of My Genius) (2006)
- Introduction (Hello Out There) (2000)
- Introduction (Heroines) (1990)
- Introduction (James Patrick Kelly's Strangeways Magazine #1) (2011)
- Introduction (James Patrick Kelly's Strangeways Magazine #2) (2011)
- Introduction (The Last of the O-Forms) (2005)
- Introduction (The Secret History of Science Fiction) (2009) with John Kessel
- Introduction (Tomorrow Factory) (2018)
- Introduction to "Article of Faith" (2012)
- Introduction to The Gods of Mars (2001)
- Introduction: Digital Rapture (2012) with John Kessel
- Is the Internet Broken? (2018)
- It's an Honor Just to Be Nominated (2014)
- It's Educational (2014)
- James Patrick Kelly (1981)
- Jim Turner: An Appreciation (1999)
- Kate Wilhelm (2018)
- Ketchup (2001)
- Kid Stuff (2000)
- Laughs (2003)
- Letter (NYRSF, November 1989) (1989)
- Listen, Watch, Read (2018)
- Live Long and Whatever (2020)
- Looking Back on Cyberpunk Through Mirrorshades (1987)
- Lucius Shepard (2014)
- Making Monsters (1996)
- Masks (2012)
- Mastery (2005)
- Meditations on the Singular Matrix (2003)
- Meet Your Subliminal Self (2020)
- Michael Swanwick (2002)
- Mind the Gap (2009)
- Mobility (2013)
- More Editing and Writing (2014)
- Movies (2002)
- Mundane (2008)
- New Brains for Old (2011)
- On "Men Are Trouble" (2006)
- On Burn (2007)
- Pixel-Stained Technopeasants (2007)
- Podcasters! Learn Audio Engineering in Your Spare Time (2010)
- RAH (2007)
- Read This (NYRSF, April 2003) (2003)
- Readers' Writers (2000)
- Recommended Short Fiction (1994) (1995)
- Remembering Bertie (2017)
- Return to "Fire Watch" (2010)
- Sci-Fi (1999)
- Screen Dreams (2017)
- Screen Dreams, the Sequel (2022)
- Secrets of the Webmasters (Part One) (2006)
- Secrets of the Webmasters (Part Two) (2007)
- Seriously, Series (2016)
- SETI and Such (2005)
- Seven Things I Know About Connie Willis: (Some of Which May Not Be True) (2006)
- SF Economics 101 (2013)
- SFWA (2008)
- Singular (2001)
- Slipstream (2003)
- Slipstream, the Genre That Isn't (2006) with John Kessel
- Son of Ebooks, The Next Generation, Vol. III (2012)
- Son of Gallimaufry (2008)
- Son of Movies (2006)
- Sporty (2020)
- Stationed (2014)
- Steamed (2011)
- Still Crazy About Dinosaurs (2016)
- Stories After Kafka (2011) with John Kessel
- Storming the Academy (2008)
- Super! (2021)
- TANSTAAFL (1999)
- Ten Best Sites? (2011)
- The Adventures of Everyman, an Introduction (Hello Out There) (2000)
- The Art of Algorithms (2018)
- The Care and Feeding of Authors (2010)
- The Game's Afoot! (2021)
- The Horror, the Horror (2002)
- The Living and the Dead (2007)
- The Next Wave (2003)
- The Optimist's Tale (2015)
- The People's Telescope (2009)
- The Price of Free (Part One) (2010)
- The Price of Free (Part Two) (2010)
- The Ring of Time (2000)
- The State of Pod (2009)
- The Story Doctor Is (In) (Mothership Zeta, April 2016) (2016)
- The Story Doctor Is (In) (Mothership Zeta, January 2016) (2016)
- The Story Doctor Is (In) (Mothership Zeta, January 2017) (2017)
- The Story Doctor Is (In) (Mothership Zeta, July 2016) (2016)
- The Story Doctor Is (In) (Mothership Zeta, October 2016) (2016)
- The Story Doctor is (In): Sleeping with Spirits (2015)
- The Tech that SF Made (2021)
- The Three Laws of Great Endings and My Two Shameless Hacks (2021)
- The World of Series (2016)
- There's Something About Mars (2016)
- Things Change (2017)
- Thinking About Dinosaurs (2016)
- Time Party (2017)
- Time Travel (2004)
- To the Reader of "Think Like a Dinosaur" (2013)
- Two Dooms (2020)
- Unknowable Somethings (2022)
- Unreal Life (2012)
- Untitled Asimov's Appreciation (And No Torment Shall Touch Them) (2017)
- Warning: The Internets May Be Harzardous to Your Health! (2011)
- We Are the Cat People (2018)
- We Have the Technology (2015)
- Websites R.I.P.? (2012)
- Webzines (2001)
- Welcome Our Robot Overlords! (2016)
- Welcome to Asimov's (2015)
- Welcome to Screentime (2022)
- What Counts? (2013)
- What Information Wants (2020)
- What is Reality? (2012)
- What's New? (1998)
- Where are the Crispr Cops? (2019)
- Which Way? (1999)
- Who Are You Calling a Punk? (2020)
- Who Owns Cyberpunk? (2013)
- Wizardry (2012)
- Wizardry (2012)
- Writer's Workshops (1991)
- Writers' Workshops (1987)
- Writing (1999)
- Writing Lessons (2011)
- X O (2018)
- You and Your Characters (1991)
- You Can Get Everywhere from Here: Start (1998)
- A Scattering of Jades (2003) by Alexander C. Irvine
- A Shortcut in Time (2003) by Charles Dickinson
- Down and Out in the Magic Kingdom (2003) by Cory Doctorow
- Jesus on Mars (1979) by Philip José Farmer
- Mirrorshades: The Cyberpunk Anthology (1987) by Bruce Sterling
- Singularity Sky (2003) by Charles Stross
- The Fallen (2003) by Dale Bailey
- Alterations (2017) with James Patrick Kelly
- Both Sides of the Desk (2013) with Robert Silverberg and Gardner Dozois and Jeff VanderMeer
- Editors, Unedited (2014) with Robert Silverberg and Gardner Dozois and Jeff VanderMeer
- James Patrick Kelly: Explorer (2006) with James Patrick Kelly
- James Patrick Kelly: Writing on the Edge (2002) with James Patrick Kelly
- "Encounter with a Gadget Guy" (2021) by Terry Bisson
- A Few Words with James Patrick Kelly (2016) by uncredited
- Alterations (2017) by James Patrick Kelly
- An Interview with James Patrick Kelly (2009) by Marshall Payne
- Author Spotlight: James Patrick Kelly (2011) by Erin Stocks
- Author Spotlight: James Patrick Kelly (2013) by Earnie Sotirokos
- Dependent Intelligence, Humanism, and a City in a Paragraph: A Conversation with James Patrick Kelly (2018) by Chris Urie
- Ein Gespräch mit James Patrick Kelly [German] (1999) by Frank Borsch
- From the Wellspring: Interview with James Patrick Kelly (2011) by uncredited
- Interview: James Patrick Kelly (2006) by Victoria McManus
- James Patrick Kelly: Explorer (2006) by James Patrick Kelly
- James Patrick Kelly: Writing on the Edge (2002) by James Patrick Kelly
- Q & A: Albedo One (2011) by uncredited